Installation

Right now SCMER is avaialbe on GitHub, you can run:

pip install scmer

to install from PyPI or:

git clone https://github.com/KChen-lab/SCMER.git
cd SCMER
pip install -e .

to install from GitHub. We recommend SCANPY for data preprocessing and visualization. If your data is available in Seurat, “loompy” may be useful for migrating it to Python.